A role-specialized Mixture-of-Agents (MoA) that combines medical knowledge retrieval with contrastive similar-patient reasoning is studied, placing role design as a key factor in privacy-constrained, training-free clinical LLM prediction.
Abstract
Large Language Models (LLMs) are increasingly applied to clinical prediction tasks such as in-hospital mortality and readmission from electronic health records (EHRs). Privacy and compliance constraints motivate systems that can be deployed locally, which has increased interest in open-weight multi-agent designs. However, most medical multi-agent systems are evaluated as a single block, leaving unclear which agent role contributes to prediction and whether retrieval drives observed gains. We study a role-specialized Mixture-of-Agents (MoA) that combines medical knowledge retrieval with contrastive similar-patient reasoning. By varying the role design while holding the retrieval setup fixed, we localize the main effect to the final integrator. Pairing large open-weight analysts with a small open-weight integrator matches closed-model prompting on F1 for mortality prediction while flagging substantially more true high-risk patients. Mechanism analysis shows the role assignment directly yields a high-recall operating point without threshold tuning. The effect is task-dependent, with smaller gains for readmission because the available records correlate weakly with this longer-horizon outcome. These results position role design as a key factor in privacy-constrained, training-free clinical LLM prediction.
This work introduces future querying, a paradigm that probes whether large language models can function as implicit medical world models by evaluating their ability to answer time-indexed clinical queries about a patient's future, and shows that small, locally fine-tuned open-weight models can match or approach larger proprietary systems, making the framework suitable for privacy-preserving, on-premise deployment.
Siri Willems, James Butterworth, L. Goetschalckx et al.· 0 citations
Electronic health records support a wide spectrum of clinical prediction and decision-support studies, but reproducible EHR research now requires more than training a single predictive model. As the field expands from machine learning and deep learning to LLM-based and agentic AI, differences in cohort construction, temporal preprocessing, label definitions, patient-level splits, and evaluation protocols can overshadow the methods being compared, making fair comparison and model selection difficult in practice. This tutorial presents OneEHR, an open-source toolkit that defines a unified experiment contract for modern EHR modeling and enables head-to-head comparison among conventional, neural, LLM-based, and agentic methods through a single configuration-driven interface. The three-hour hands-on session interleaves a methodological survey with guided practice: participants will learn why EHR experiments are vulnerable to leakage, distribution shift, and irreproducible preprocessing, and then use OneEHR to configure, execute, compare, and interpret experiments across this method spectrum. Attendees will leave with reusable configurations and a practical framework for integrating reproducible workflows into their own clinical AI research. Code and documentation are available at https://medx-pku.github.io/OneEHR/.
Yinghao Zhu, Zixiang Wang, Lei Gu et al.· Proceedings of the 32nd ACM...· 0 citations
Predictive models over structured electronic health records (EHRs) remain central to machine learning for healthcare, but few have jointly emphasized quantitative laboratory information and interpretability with respect to input medical events. We present BERT-LER, a BERT-style model for coded EHR timelines pretrained and fine-tuned from a de-identified EHR dataset of 75 million patients, that encodes laboratory test results as discrete tokens while retaining graded information through percentile-based binning, paired with Integrated Gradients for token-level attributions grounded in the input EHR sequence. We benchmark our approach on the public EHRShot benchmark suite and on an asthma severity progression study based on real-world data. This addresses a methodological gap in EHR foundation-style modeling by unifying laboratory value representation and explainability in a single framework, while assessing whether both predictive performance and explanations generalize beyond standard clinical prediction tasks. Across EHRShot and asthma tasks, BERT-LER achieves predictive performance that is competitive with, and on laboratory-related tasks often exceeds, publicly available benchmark models, and provides attributions that align with clinically known risk factors. Our architecture and explainability approach can be applied to many therapeutic areas and prediction tasks using language models trained on structured EHRs.
Jun Ni Du, Lukas Adamek, Maxim A Kryukov et al.· 0 citations
Background: Disease severity is a multidimensional construct difficult to capture with rule-based approaches in Electronic Healthcare Records (EHR). Agentic large language model (LLM) systems could synthesise clinical evidence and reason over EHRs, but remain unevaluated for this task. Methods: MOSAIC is a two-phase agentic LLM framework for severity phenotyping, using type 2 diabetes (T2D) as a proof-of-concept. MOSAIC was evaluated on a synthetic cohort (SyntheticMass; open-weight N = 4,886; closed-weight N = 200) against three algorithmic ground truths (DCSI, DiSSCo, Cooper) and against all-cause mortality and incident complications. Open-weight (locally deployable) and proprietary pipelines were also compared. Results: The generated framework spanned domains absent from the comparators, including biomarker-based glycaemic staging, beta-cell function, and social determinants of health. Open-weight MOSAIC matched the proprietary pipeline (closed- vs open-weight weighted kappa = 0.773) and reached moderate agreement with Cooper (kappa = 0.597) and DCSI (kappa = 0.534) and fair agreement with DiSSCo (kappa = 0.320). Agent-based (Type 1) tiers showed significant separation of all-cause mortality (log-rank p<0.001; crude hazard ratios 1.6-2.4 for non-Baseline tiers), with non-monotonic separation at the upper tiers, and an inverse gradient for incident complications (log-rank p<0.001) consistent with depletion of susceptibles. Agentic classification also diverged from deterministic execution of the same rubric (MOSAIC Frozen; kappa = 0.428), indicating reasoning beyond fixed rules. Conclusion: MOSAIC shows agentic LLM systems can generate and apply clinically meaningful severity phenotypes from structured EHR data in T2D. Extending it to other diseases with similarly multidimensional severity warrants further research.
Manuel Suero, Arnault-Quentin Vermillet, Nicole Sonne Heckmann et al.· 0 citations
Findings show that clinical LLM explainability has shifted toward fluent generative rationales, but evidence that such explanations reflect model reasoning remains limited, and three regulatory priorities are highlighted: prioritizing explanations that enable independent verification or logic auditing over plausibility-only rationales; preferring inspectable models where regulatory documentation is required; and prospectively validating explanations in clinical workflows before scaling.
Developing artificial intelligence capable of clinical language comprehension and reliable diagnostic reasoning has remained a core challenge in biomedical engineering. While Large Language Models (LLMs) demonstrate significant potential in general natural language processing tasks, their direct application in the medical domain is severely constrained by parametric hallucinations and data silos. This paper introduces an end-to-end, resource-efficient, multilingual speech-driven Question-Answering (QA) framework optimized for localized clinical support. To accommodate deployment on consumer-grade execution environments, we implement Parameter-Efficient Fine-Tuning (PEFT) using Low-Rank Adaptation (LoRA) and 4-bit Quantized LoRA (QLoRA) configurations across open-source 3B and 7B parameter architectures. Human preference alignment is enforced via a stateful Reinforcement Learning with Human Feedback (RLHF) loop applying Proximal Policy Optimization (PPO). Crucially, to mitigate the vulnerabilities of passive information retrieval, we introduce an Active Validation Loop powered by Corrective Retrieval-Augmented Generation (CRAG). This validation engine is decoupled from the model harness using the Model Context Protocol (MCP), standardizing asynchronous lookups across dense vector repositories, clinical guidelines, and real-time electronic health registries.
Misha Patel· International Journal of Sci...· 0 citations
What if pathology foundation models could do more with less? GigaPath-Flash and GigaTIME-Flash cut computational demands while maintaining strong performance, opening the door to larger studies and broader exploration. The post GigaPath-Flash and GigaTIME-Flash: Toward population-scale discovery with efficient pathology foundation models appeared first on Microsoft Research.
MIT News · Artificial Intelligence· news.mit.eduAug 31, 2026
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