Sep 2026· Zenodo (CERN European Organization for Nuclear Research)
Abstract
This paper investigates the representation of information flow within neural networks, proposing that the transmission of information is not a random process but rather governed by a specific topological structure. The core argument centers on the idea that the network's topology dictates the pathways through which information propagates and, consequently, influences its processing capabilities. We introduce a methodology for constructing a neural network information flow topology graph based on analyzing the strength, delay, and direction of connections between neurons. Utilizing topological analysis techniques, this framework aims to decipher the operational mechanisms of neural networks by interpreting the network's structure as a representation of information flow. This approach distinguishes itself from traditional neural network research, which frequently focuses on individual neuron activation without considering the overarching network topology. The research emphasizes a holistic view, recognizing the importance of the network's interconnectedness in shaping information processing. The methodology presented offers a novel perspective for understanding complex neural systems, potentially leading to improved network design and analysis.
Agile methods continue to gain popularity. In particular, the Scrum method appears to be on the verge of becoming a de-facto standard in the industry, leading the so called Agile movement. While there are success stories and recommendations, there is little scientifically valid evidence of the challenges in the adoptio...
A. Marchenko, P. Abrahamsson· Agile Conference· 59 citations· ⚡11
A comprehensive taxonomy of the challenges faced when a medium-scale organization decided to adopt software platforms is provided, namely: business challenges, organizational challenges, technical challenges, and people challenges.
Yaser Ghanam, F. Maurer, P. Abrahamsson· Information and Software Tec...· 41 citations· ⚡3
It is shown that high article processing charges are not sufficiently justified by the publishers, which often lack transparency and may prevent authors from adopting OA.
D. Graziotin, Xiaofeng Wang, P. Abrahamsson· Scientometrics· 21 citations· ⚡1
MCGLPPI, a novel geometric representation learning framework that combines graph neural networks (GNNs) with the MARTINI molecular coarse-grained (CG) model to predict overall PPI properties accurately and efficiently, offers an effective and efficient solution for PPI overall property predictions.
Yang Yue, Shu Li, Yihua Cheng et al.· bioRxiv· 15 citations
Abstract Predicting properties from coordinate–category data—sets of vectors paired with categorical information—is fundamental to computational science, manifesting in materials science as predicting formation energies or elastic moduli from crystal structures. While large language models (LLMs) have increasingly been...
Nawaf Alampara, Santiago Miret, Kevin Maik Jablonka· Nature Computational Science· 13 citations
PepPCBench enables a robust evaluation of PFNN-based methods and supports their continued development for peptide-protein structure prediction, and highlights the influence of peptide length, conformational flexibility, and training set similarity on prediction accuracy.
Si-Long Zhai, Huifeng Zhao, Ji-Ke Wang et al.· Journal of Chemical Informat...· 13 citations· ⚡1
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