Decoupled Pipeline with Proposal Reranking and Score Fusion for Positive-Unlabeled Marine Species Detection
TL;DR
These experiments showed that reserving proposal recall, avoiding over-aggressive filtering, and improving downstream ranking were more effective than fine-tuning the detector or directly training on noisy pseudo-labels.
Abstract
The FathomNetCLEF 2026 competition combines underwater object detection and fine-grained marine species classification under a positive-unlabeled evaluation setting. The provided training labels are sparse, while the hidden test set is out-of-distribution relative to the training imagery, creating both annotation incompleteness and source-shift challenges. We describe DS@GT ARC's multi-stage system developed for this setting while keeping model training restricted to the data provided by the competition. The final private-leaderboard model uses a frozen Megalodon YOLOv8x detector as a class-agnostic proposal generator, combines global and tiled inference with tile-edge filtering, classifies expanded proposal crops with a LoRA-finetuned DINOv3 ViT-H classifier, and ranks predictions using weighted geometric fusion of detector and classifier confidence. This system placed 12th out of 102 teams. A closely related variant added a locally trained TTN-inspired validity head as a light reranking signal, improving public-leaderboard and proxy-evaluation performance but slightly reducing private-leaderboard performance. Across experiments, the strongest lesson was that train-derived validation and detector-only metrics were not reliable enough for model selection. Instead, we used proxy datasets only for validation and comparison, and combined those signals with leaderboard feedback and targeted ablations. These experiments showed that reserving proposal recall, avoiding over-aggressive filtering, and improving downstream ranking were more effective than fine-tuning the detector or directly training on noisy pseudo-labels. Code: https://github.com/dsgt-arc/fathomnetclef-2026.