Large-scale, standardized datasets have driven many advances in AI-based scientific modeling, from protein structure prediction to natural language processing. Infectious disease epidemiology is increasingly adopting AI methods for forecasting, surveillance, and outbreak analytics, but the time-series data available to train them remains orders of magnitude smaller than the corpora behind the advances seen in other fields. Because the scope of real-world epidemiological data cannot practically reach the scale needed to train truly large-scale AI methods, simulated data provides a possible alternative. Here we introduce Reservoir, a large open simulator and dataset of realistic epidemic simulations in which every trajectory carries complete ground-truth labels, including quantities that cannot be measured directly in a real outbreak, such as true infection counts, time-varying reproduction numbers, and counterfactual intervention effects. Reservoir is generated by a stochastic simulator with realistic noise and reporting artifacts, together with interventions with configurable timing, compliance, and age-dependent efficacy. The current release contains 500,000 outbreak trajectories spanning one billion simulated days across diverse pathogen characteristics, population structures, and intervention regimes. Reservoir enables counterfactual experiments, surveillance-design studies, and training of epidemic models at a scale real-world datasets cannot provide.
This work introduces Generative Neural Inference for Epidemics (GENIE), a spatio-temporal ML-based framework for high-resolution forecasting of the burden of respiratory pathogens and demonstrates superior performance across a range of measures.
Laura M Guzman-Rincon, George R.E. Bradley, Joel Kandiah et al.· 0 citations
This critical narrative review evaluates statistical, mathematical, machine-learning and hybrid approaches to infectious disease dynamics, with emphasis on inferential purpose, data-generating and observation processes, uncertainty, validation, interpretability and public-health use.
Hamid H. Hussien, Muhammed Aljifri, Nuha Hassan Hagabdulla et al.· Asian Journal of Probability...· 0 citations
There is a potential disconnect between the performance of models vis-a-vis traditional forecasting scores and their performance in answering the questions that variant forecasts are most often used for.
Thanasi Bakis, Andrew F. Magee, S. Olesen· 0 citations
A four-step framework to generate synthetic data for the simulation-based validation of statistical methods is proposed, broadly applicable beyond the specific medical use case, and relies on careful, domain-informed parameter curation to generate meaningful synthetic datasets.
H. Marchi, S. Schmiegel, T. Schamberger et al.· BMC Medical Research Methodo...· 1 citation
ConvRt is a frequentist method for retrospective and real-time estimation of effective reproduction number (R_t) that deconvolves latent infections and then estimates $R_t$ with successive penalized-likelihood steps, using a spline basis to model smooth curves.
Jeremy Goldwasser, R. Tibshirani, A. Bilinski· 0 citations
A lightweight fine-tuning framework is developed that adapts pre-trained LLMs using compact embedding and prediction layers and evaluates it on seven weekly aggregated real-world surveillance datasets, establishing fine-tuned LLMs as efficient and robust forecasting tools suitable for privacy-sensitive, data-scarce pub...
A new computational approach reveals how cells communicate to assemble into tissues. This could accelerate stem cell engineering, improve disease models, and inform therapies.
Microsoft Research Blog· microsoft.comOct 15, 2026
Zero-knowledge proofs can verify computing results without rerunning workloads or exposing sensitive data. Magnetar helps bring them into the mainstream with support for standard programming languages, major speed gains, and quantum-resistant security. The post Proof-based general-purpose computing with Magnetar appeared first on Microsoft Research.