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The plastid genomes of Salvia are structurally conservative but contain sufficient localized variation for marker development and species discrimination, and the expanded plastome phylogeny improves resolution of major evolutionary lineages within the genus.
The whole-plastome phylogeny recovered Bupleurum as monophyletic relative to Chamaesium, and only one of seven multi-accession operational binomial groups was monophyletic, and only one showed a positive local barcode gap.
12 plastomes representing major Mentha species, hybrid taxa, and unresolved accessions are analyzed to characterize plastome structure, repeat composition, sequence divergence, phylogenetic relationships, and plastid RNA editing.
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