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Jia-Bei Cheng

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Open access Sep 2026

stFormer integrates spatial ligand signaling into a foundation model for spatial transcriptomics.

Recent foundation models for single-cell transcriptomic data generate informative, context-aware gene and cell representations. Spatial transcriptomic (ST) data offer extra positional insights but were not considered by these single-cell models. We introduce stFormer, a transformer model tailored for ST data, which emp...

Sheng-Hao Cao, Kai-Yuan Yang, Jia-Bei Cheng et al. · 0 citations

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