Author

Junchi Yan

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Jul 2026

Structure-alignment-driven cross-graph modeling for functional RNA design

An RNA design approach, AlignIF, that leverages multiple structure alignment with cross-graph modeling and carefully hand-designed features to capture evolutionarily conserved structural patterns at the structural level, facilitating RNA sequence design outperforms existing state-of-the-art methods in test sets.

Sheng-Fan Wang, Jun Wang, Xiao-Jian Liu et al. · Nature Computational Science · 2 citations · ⚡1

Open access Jul 2026

IgGM2: An All-Atom Foundation Model for Adaptive Immune Receptor Design

IgGM2 follows a structure-to-design strategy: it first learns how immune receptors are positioned around fixed target structures, and then transfers this target-conditioned structural prior to CDR design, allowing frame-work geometry to adapt to designed CDRs without separate inverse folding or external sidechain packi...

Jian Ma, Fandi Wu, Lin Yao et al. · bioRxiv · 0 citations