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Pradnya N. Ghorpade

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#generative ai Dataset Open access Oct 2026

MacroPPI-Bench: data and code for "Generative AI for Macrocyclic Peptides at Cancer and Other Interfaces: Two Refuted Assumptions"

Curated benchmark, analysis code and generated results for the study Generative AI for Macrocyclic Peptides at Cancer and Other Interfaces: Two Refuted Assumptions. Contains MacroPPI-Bench Tier 1 (65 synthesised macrocyclic peptide designs, 24 binders, 6 protein targets, with per-row provenance); a per-design table joi...

Dokyun Na, Pradnya N. Ghorpade · 0 citations
#graph neural networks Open access Oct 2026

NicheTarget-GNN: niche-aware graph neural networks with counterfactual perturbation for cell-state-specific target discovery in the tumor microenvironment

Code, simulator, analysis scripts and raw outputs for the manuscript 'Niche-Aware Heterogeneous Graph Neural Networks with Counterfactual Perturbation for Discovering Cell-State-Specific Druggable Targets in the Tumor Microenvironment' (Computers in Biology and Medicine, submitted). Includes the simulation benchmark, t...

Dokyun Na, Pradnya N. Ghorpade · 0 citations

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