Author

W. Vranken

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#protein folding Open access Oct 2026

Polyploid Achromatium sp. expresses protein variants based on environmental cues

This work incubates freshly collected freshwater Achromatium under three temperature conditions and provides the first indication that Achromatium uses distinct protein variants under different environmental conditions, enabling it to swiftly respond to environmental changes through differential expression from its cac...

Sophie-Luise Heidig, Sunu Lama, J. Rijal et al. · bioRxiv · 0 citations

Open access Aug 2026

Scop3P-Toolkit: executable structure-aware workflows linking PTMs, peptides, and mutations to protein function

Scop3P-Toolkit is an open-source executable analytical environment for interactive analysis of PTMs, mutations, and proteomics-derived peptides in their structural context, providing transparent, accessible, and reproducible workflows for both computational and experimental researchers.

Adrián Díaz, Natalia Tichshenko, Boris Depoortere et al. · bioRxiv · 0 citations

Open access Jul 2026

Scop3P in 2026: an expanded proteomics-informed resource contextualizing phosphorylation sites through sequence, structure, mutation, and experimental provenance

A major update of Scop3P, a proteomics-informed knowledgebase that contextualizes human phosphorylation sites within integrated sequence, structural, biophysical, evolutionary, and mutational frameworks, and provides a scalable and provenance-aware resource for phosphosite interpretation, hypothesis generation, and dat...

P. Ramasamy, Natalia Tichshenko, Adrián Díaz et al. · bioRxiv · 0 citations