Skip to content
Open access

A Correlative Microscopy Dataset for Multimodal Data Fusion and Image Matching in Materials Science

Aug 2026 · Scientific Data · 1 citation

Abstract

Gaining understanding of process-structure-property relationships in materials at a mechanistic level relies on correlative microscopy workflows. These workflows, in turn, fundamentally depend on image matching, i.e., a computer vision task with the objective of finding point correspondences in pairs of images. Matching models are difficult to evaluate quantitatively in the materials field due to a shortage of representative benchmark datasets. Nonetheless, prior research indicates that traditional rule-based image matching techniques such as the surface-invariant feature transform (SIFT) currently fall short on such matching tasks. We present a dataset for cross-modal image matching and data fusion in the materials microscopy domain, which we coin AmalgaMatch , to support model benchmarking and fine-tuning efforts. All images are micrographs captured using the most widely applied imaging techniques in materials science including light-optical, scanning electron, and transmission electron microscopy, as well as electron backscatter diffraction (EBSD). Therein, various detectors and imaging modes are employed to capture micrographs of diverse materials. While the majority of images are raw images, some underwent typical processing routes using digital image correlation or EBSD indexing. Common regions in image pairs are populated with hand-annotated keypoint correspondences. While mutual information is limited in cross-modal, multi-scale image pairs, we relied on characteristic defects such as dislocations, grain boundaries, triple junctions, inclusions, pores or topographic features for annotation. Furthermore, the dataset is divided into groups, defined by distinct registration use cases, and further into subsets, defined by the imaged material. The dataset covers many typical use cases for image matching in materials science, including slip partitioning, dislocation characterization, and surface fractography. In total, it comprises 6 groups and 19 subsets with 35 scenes and 187 annotated image pairs to support autonomous multimodal materials data fusion. For each image, we provide structured metadata to facilitate training of hybrid matching models which process textual alongside image-based inputs to improve the matching quality and robustness. A formal ontological model for correlative microscopy and image matching processes is proposed to express image contents, relationships, and transformations through knowledge graphs and to enable aligning with FAIR data principles.

Read PDF

Similar papers

Review Aug 2026

Acquisition Geometry-Assisted Whole-Group Localization of X-ray Fluorescence Maps in Optical Microscopy Images

X-ray fluorescence (XRF) microscopy maps elemental distributions, while optical microscopy can provide complementary morphological context. Localizing XRF fields of view (FOVs) in optical images is difficult because the two modalities differ in contrast mechanism and resolution. Most current workflows place each XRF ti...

Xiang-Yu Yin, T. Paunesku, Letonia Copeland-Hardin et al. · 0 citations
Open access Jul 2026

A Fourier-based global denoising model for the smart removal of artifacts in microscopy images

A global denoising model (GDM) to smartly remove artifacts from microscopy images while preserving weaker but physically important features is proposed and the tuning effect between two imaging input channels on the trade-off performance between artifact removal and feature preservation is showcased.

Huan-Huan Zhao, Connor Vernachio, Laxmi Bhurtel et al. · 0 citations
Open access Aug 2026

QuantEM: An optimized platform of vision transformer-based models for segmentation and analysis of electron microscopy data

QuantEM, an open-source platform for segmentation and analysis of EM data across imaging modalities, tissues, and species, is presented and its utility is demonstrated by revealing previously unrecognized subcellular compartmentation of hepatic glucokinase using immuno-electron microscopy.

Christopher Acree, Evan S. Krystofiak, Katie C. Coate et al. · 0 citations
#small language model Preprint Aug 2026

XRF-to-Optical Field-of-View Localization with Vision Language Models

This paper evaluates training-free vision language model (VLM) localization on two datasets representing same-section high-correspondence and adjacent-section low-correspondence imaging and tests unconstrained and metadata-constrained search and VLMs with geometric controls, classical template matching, and two alterna...

Xiang-Yu Yin, T. Paunesku, Letonia Copeland-Hardin et al. · 0 citations
Open access Aug 2026

Whole-organ surface mapping using multiview projection reconstruction

PRISM leverages multiview image projections to promote studies of cardiac lymphatics in mouse models and surface receptor distributions within spheroid models, enabling efficient surface mapping of large, intact, and uncleared biological samples across a variety of scales.

Elizabeth Brewer, Milad Almasian, Alireza Saberigarakani et al. · 0 citations
Open access Aug 2026

Deep learning for nanoscience scanning electron microscope image classification

A multi-class classification framework is proposed for SEM images of nanostructures, categorized into nanowires, fibers, and tips, and the experimental results demonstrate that both SMOTE strategies effectively address class imbalance, while the pixel-level approach achieved the highest classification performance.

Neama Sayed, M. R. Mouhamed, A. Labib et al. · 0 citations

We use cookies to run the site and, with your consent, for analytics and to show ads. See our Cookie Policy.