Aug 2026· ACS Omega· Vol 11, pp. 51623 - 51634· 0 citations· 101 references
Medicine
Abstract
Reliable density functional theory (DFT) methods for thermally driven cyclization reactions remain insufficiently established, particularly for systems in which proton transfer, conformational preorganization, and weak environmental effects jointly shape the energy landscape. Here, we present a systematic benchmark of DFT exchange–correlation functional/basis-set combinations against CCSD(T) reference energies for the thermal Conia–Ene cyclization, using chain length and explicit water assistance as chemically relevant probes of functional performance. Representative reaction profiles were constructed for two model substrates (hex-5-ynal and hept-6-ynal), considering pathways with and without explicit water, in both gas phase and implicit solvent. The reaction proceeds stepwise through enolization followed by cyclization, with enolization defining the intrinsic kinetic bottleneck in the water-free pathway (ca. 70 kcal mol–1). Explicit water selectively lowers this barrier by up to 30 kcal mol–1 through proton-transfer mediation, whereas the cyclization barrier is primarily controlled by chain length through transition-state preorganization; implicit solvation has only a minor energetic effect. Across 38 approximate exchange–correlation functionals and 14 basis sets, range-separated hybrids provide the most accurate and balanced description of both activation barriers and reaction energies. In particular, ωB97XD and CAM-B3LYP-D3BJ achieve near-chemical accuracy, with mean absolute errors close to 1 kcal mol–1 when combined with triple-ζ basis sets containing polarization and diffuse functions. Comparable accuracy is also achieved by the double-hybrid functionals mPW2PLYP and DSD-PBEP86, albeit at a substantially higher computational cost. Overall, this study establishes a practical CCSD(T)-referenced benchmark and identifies robust DFT protocols for modeling thermal Conia–Ene cyclizations, with expected transferability to more complex substrates and confined environments.
We investigated the energetics and bonding of lithium hydride clusters (LiH)n (n = 1-6) using a composite ab initio scheme inspired by W2 theory to achieve sub-kcal/mol accuracy. This approach combines CCSD(T) results extrapolated to the complete basis set limit with a rigorous treatment of core-valence correlation, sc...
Emmanouil C. Semidalas, Filippos Drakopoulos, E. A. Routsi et al.· Journal of Chemical Physics· 0 citations
Halogen bonding (XB) is often analyzed in terms of isolated dimers, yet under realistic solution conditions, it coexists with a dense, rapidly fluctuating network of weaker contacts whose net effect on bond strength is difficult to quantify. Here, we combine gas-phase quantum-chemical calculations with explicit-solvent...
D. V. Krutin, A. A. Titova, M. Kaplanskiy et al.· Journal of Physical Chemistr...· 0 citations
Predicting site selectivity during the earliest stages of solvation in multifunctional organic molecules remains a complex challenge in chemical physics. In this work, we use high-resolution rotational spectroscopy and quantum-chemical calculations to decode the hydration landscape of N,N-diethylacetyloxyamine (DEAcA),...
Filippo Baroncelli, L. Evangelisti, J. López et al.· Journal of the American Chem...· 0 citations
A systematic density functional theory study of hydrogen bonding, cooperative binding, and Grotthuss proton transfer in PVA/CA/H₃PO₄ proton exchange membranes is presented. Twenty-three calculations were performed at the B3LYP-D3BJ/6-31G* level using ORCA 6.1.1, encompassing geometry optimisation, potential energy surf...
Anodic intramolecular cyclization reactions have substantial synthetic utility for formation of cyclic carbon–carbon or carbon–heteroatom bonds. For cases of intramolecular trapping of a cation radical by a protic nucleophile, the cyclization step coincides with a substantial increase in substrate acidity and thus may...
Shahriar N. Khan, John H. Hymel, Jesse G. McDaniel· Journal of Organic Chemistry· 0 citations
Free energies of solvation (ΔGsol) in a prototypical liquid alkane, cyclohexane, have been computed for 101 organic molecules at 25 °C. Monte Carlo statistical mechanics (MC) was used with free-energy perturbation theory (FEP) and both OPLS united-atom (UA) and all-atom (AA) force fields. Updated OPLS-UA parameters are...
W. Jorgensen, J. Tirado-Rives· Journal of Chemical Theory a...· 0 citations
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