Receptor-mediated endocytosis requires a particle to approach the cell membrane to within a few nanometers before ligand–receptor binding can occur. Existing continuum models often start from an already established contact and do not explicitly describe how crowding particles on the extracellular side influence the distribution of the particle near the membrane. We examine entropic depletion forces as one possible nonspecific contribution to this initial approach. For ideal depletants, the Asakura–Oosawa excluded-volume construction gives an exact depletion potential for the planar geometry before contact. The potential and force vanish continuously at the onset of excluded-volume overlap. This interaction provides a possible contribution to membrane proximity before specific binding, while its extension to curved wrapping geometries requires additional approximation. Within a reduced continuum model, we combine depletion attraction, ligand–receptor binding, membrane deformation, and cytoskeletal viscoelastic dissipation. The viscoelastic contact is formulated through a hereditary integral and a standard linear solid. The kinetic model gives a conditional minimum ligand density for complete engulfment, a finite particle-size window, and a stiffness-dependent upper limit. When the stationary radius lies inside the domain of finite positive wrapping times, the estimated wrapping time has a minimum at a radius that decreases with increasing binding energy density. At fixed viscosity and other independent parameters, the same time approximation predicts slower wrapping as cell stiffness increases. The two positive roots defining the size window merge at a limiting parameter value, which characterizes closure of the admissible size interval. Depletion attraction is interpreted as one possible contribution to particle-membrane association, alongside electrostatic interactions, steric effects, and membrane fluctuations. The present analysis identifies how nonspecific attraction, specific adhesion, and mechanical resistance can contribute to different stages of membrane wrapping.
We present a novel computational framework that couples smoothed particle hydrodynamics~(SPH) with a triangulated membrane mesh to simulate the dynamics of vesicles suspended in fluids. A novel interface-tracking approach enforces membrane impermeability naturally, without resorting to non-physical constraints such as...
Kuiliang Wang, Xinwei Cai, Ting Ye et al.· 0 citations
Clathrin-mediated endocytosis (CME) is the primary pathway for internalization of extracellular and membrane cargo in eukaryotic cells. It is characterized by a patch of the plasma membrane invaginating and pinching off to generate a cytoplasmic vesicle. Recently, experimental evidence has begun to accumulate in suppor...
M. A. Ferrin, D. Mokbel, M. Mokbel et al.· bioRxiv· 0 citations
Contact inhibition of proliferation (CIP) enables epithelial tissues to self-regulate growth and maintain tissue homeostasis. However, how cell-level mechanical contact, tissue-scale structural order, and proliferation kinetics interplay remains a fundamental open question in living matter physics. Here, we present a p...
Kinetic models of protein aggregation describe populations by size, not by spatial organization or morphology. We extend Lumry-Eyring nucleated polymerization to a model in which the monomer is a density field and each aggregate is a region bounded by a level set. Growth is a flux condition on the available sites of a...
A minimal two-dimensional TCR–pMHC mechanochemical energy-landscape model is formulated in which peptide-dependent allosteric binding geometry, hinge elasticity, receptor extension, binding-site separation and applied force jointly determine the activation barrier and bond lifetime.
Yogesh B. Bali, Alan D. Rendall, W. Quapp· Royal Society Open Science· 0 citations
The cell membrane hosts initial interactions between receptors and ligands for subsequent cellular functions. However, how the membrane spatiotemporally regulates binding mechanics in living cells remains unclear. Using magnetic tweezers, we developed a single-molecule platform to reveal that dissociation forces of i...
Sajan Shakya, Zhi-Lei Zhang, Payton Ciolli et al.· Journal of the American Chem...· 0 citations
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