A scalable, semi-automated, and physiologically relevant hiPSC-derived macrophage model, rigorously characterised through deep comparative multi-omics is established and how genetic perturbations alter pro- and anti-inflammatory transcriptional signatures and significantly impact functional phenotypes are showcased.
An ECCITE-seq framework is described to characterize the transcriptomic consequences of perturbing multiple neuronal key driver genes associated with Alzheimer's disease (AD) in human-induced pluripotent stem cell (hiPSC)-derived neurons and allows for the assessment of the regulatory impact of candidate genes implicat...
Jing-Long Zhang, K. Brennand, Bin Zhang et al.· Methods in molecular biology· 0 citations
iMacs are a versatile bridge between mechanistic immunology and next-generation translational medicine and enable large-scale production, precise genetic modification, and accurately mimic host-pathogen interactions, autoimmune phenotypes, metabolic inflammation, and tissue-specific macrophage functions.
Tara Nur Amalina, Haydar Alsagaff, Sabrina Lazimmatus Sofa et al.· Molecular Biology Reports· 0 citations
The application of CRISPR technologies in T2D genetic factor analysis and high-throughput phenotypic screening, with a focus on three key areas: glucose metabolism, lipid metabolism, and pancreatic functionality, is reviewed.
Shuang-Shuang Fan, Rui-Pu Liang, T. Fei· International Journal of Mol...· 0 citations
It is demonstrated that correction of BCOR mutation by CRISPR–Cas9 only partially restores the wildtype molecular state, highlighting the importance of early detection and monitoring of adaptive mutations in hiPSC cultures.
C. Badja, S. Boushaki, Yogesh Kumar et al.· bioRxiv· 0 citations
Perturb-ME, along with agentic interpretation, provide a scalable framework for comprehensive functional discovery from phenotype-enriched genetic screens and combines genome-scale CRISPR screening, phenotype-based enrichment and multimodal single-cell profiling.
Han-Chen Wang, Jiacheng Gu, Chris J. Frangieh et al.· bioRxiv· 0 citations
Partita, a next-generation mouse whole-genome CRISPRa sgRNA platform, designed for unparalleled efficiency in gene activation studies, is introduced, unlocking new avenues for functional genomics and expanding the toolkit for discovering key drivers of biological processes across diverse research fields.
Sarah T. Diepstraten, Yexuan Deng, Margaret A. Potts et al.· Science Advances· 0 citations
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