SAE++: Cascaded Sparse Autoencoders Learn Multi-Level Visual Concepts in Multimodal LLMs

Abstract

Multimodal Large Language Models (MLLMs) have demonstrated strong performance on vision-language tasks, yet their internal visual representations remain difficult to interpret. Sparse Autoencoders (SAEs) provide a scalable way to decompose dense model activations into sparse, interpretable features. However, existing SAE architectures primarily recover flat feature dictionaries and are less suited for explicit multi-level concept organization. In this paper, we introduce a cascaded sparse autoencoder architecture, dubbed SAE++, for learning hierarchical visual concepts in MLLMs. Rather than nesting or stacking SAE sparse activation codes, SAE++ trains a second-level SAE directly on the decoder weights of the first-level SAE, treating learned low-level feature directions as inputs for higher-level abstraction. This design enables SAE++ to learn "concepts of concepts" while avoiding drawbacks from the shared-prefix coupling of nesting, Matryoshka-style hierarchies and the bottlenecks of naively stacked SAEs. Experiments across Qwen3-VL, Gemma-3, and LLaVA on multiple visual datasets show that SAE++ improves interpretability in terms of hierarchical concept coherence over state-of-the-art SAE baselines. Results on concept steering further demonstrate that the learned concept groups support effective group-level interventions in MLLM outputs. Code is available at https://github.com/Wang-ML-Lab/sae-plus-plus.