A virtual platform for automated hybrid organic-enzymatic synthesis planning

Abstract

The integration of organic synthesis with enzymatic catalysis offers a promising route toward efficient and sustainable construction of complex molecules. While organic synthesis enables diverse transformations, enzymatic catalysis enhances stereoselectivity under mild conditions, improving cost-effectiveness and environmental impact. However, current enzymatic synthesis planning algorithms face challenges in formulating robust hybrid organic–enzymatic strategies. Key issues include the difficulty in devising hybrid planning approaches and the reliance on template-based enzyme recommendations, which limits their adaptability across diverse scenarios. Here we show ChemEnzyRetroPlanner, an open-source hybrid synthesis planning platform that combines organic and enzymatic strategies with AI-driven decision-making. The platform features advanced computational modules, including hybrid retrosynthesis planning, reaction condition prediction, plausibility evaluation, enzymatic reaction identification, enzyme recommendation, and in silico validation of enzyme active sites. A central innovation is the RetroRollout* search algorithm, which outperforms existing tools in planning synthesis routes for organic compounds and natural products across multiple datasets. ChemEnzyRetroPlanner provides an intuitive graphical interface and programmatic APIs for scalability, while leveraging the chain-of-thought strategy and the Llama3.1 model to autonomously activate hybrid synthesis strategies for diverse scenarios. The results indicate that this fully automated, open-source system holds potential value for improving the efficiency and sustainability of molecular synthesis. The integration of organic and enzymatic synthesis enhances molecule construction efficiency. Here, the authors present ChemEnzyRetroPlanner, an AI-driven platform for automated hybrid synthesis planning, improving synthesis route efficiency and sustainability.