Sep 2026· Zenodo (CERN European Organization for Nuclear Research)
Abstract
This record contains the code-only distribution of Transcript Score Audit, version 0.4.3, associated with the manuscript “A Cohort-Aware Audit Framework for Transcriptomic Composite Scores.”The archive includes Python source code, analysis scripts, twelve tests, synthetic example inputs, reference outputs, configuration files, dependency specifications, and a small simulation smoke-test workflow.This distribution is not the complete journal Supplementary Software archive. Patient-level congenital heart disease inputs, clinical metadata, original expression matrices, third-party gene-set snapshots, and the full study results are excluded. Reproducing the congenital heart disease analyses requires additional inputs described in the README.The synthetic examples and simulation smoke test support checks of installation and execution; they do not constitute full reproduction of the manuscript’s analyses. Users should consult the README for installation instructions, available workflows, required external resources, and the scope of this distribution.
This publication proposes a definition and a classification of agile software development approaches and analyses ten software development methods that can be characterized as being "agile" against the defined criterion.
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The study shows that agile practices improve both informal and formal communication, but indicates that, in larger development situations involving multiple external stakeholders, a mismatch of adequate communication mechanisms can sometimes even hinder the communication.
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The results indicate that software engineering work practices are chosen opportunistically, adapted and configured to provide value under the constrains imposed by the startup context.
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The results show that the embedded industry has been able to apply agile methods in its development processes and that the appreciation of the agile methods and their individual practices appears to increase once adopted and applied in practice.
O. Salo, P. Abrahamsson· IET Software· 238 citations· ⚡9
Consequences of happiness and unhappiness that are beneficial and detrimental for developers' mental well-being, the software development process, and the produced artifacts are found.
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The Mobile-D approach is briefly outlined here and the experiences gained from four case studies are discussed, which helped develop an agile development approach for mobile application development.
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Microsoft Research Blog· microsoft.comOct 30, 2026
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Microsoft Research Blog· microsoft.comOct 29, 2026
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