Dementia is one of the main afflictions of today's society, with Dementia with Lewy Bodies (DLB) representing around 25% of all dementias, only second to Alzheimer's Disease. DLB, together with Parkinson's Disease (PD), comprise Lewy Body Diseases (LBD), a group of disorders characterized by the presence of Lewy bodies in the brain. However, the cause for the formation of Lewy bodies, as well as their exact role on the pathogenesis of LBD, is still unclear. Recently, mutations on the vacuolar protein sorting 13 homolog C (VPS13C) gene have been found on patients diagnosed with PD and DLB, highlighting this gene as a new crucial player in LBD. VPS13C localizes to late endosome/lysosome (LE/Lys)-endoplasmic reticulum (ER) and LE/Lys-lipid droplet (LD) contact sites where it likely functions in transferring lipids. As such, VPS13C is functionally involved in maintaining proper membrane homeostasis and interorganellar communication. For the past two years, the lab has developed a series of tools, including new VPS13C antibodies as well as KO and rescued cell lines, that are paving the way to uncovering VPS13C functions in lipid metabolism and lysosomal function. In this PhD, we focus will be on the use of iPSCs and in-vivo models to validate the data obtained on immortalized cell lines. iPSCs derived from patients lymphocytes carrying VPS13C mutations are already available in house. Firstly, CRISPR/Cas9 genome editing will be used to generate isogenic controls as well as VPS13C KO iPSCs. From thereon, neuronal progenitor cells will be derived that will serve as the basis to obtain human differentiated neurons. Through a collaboration with Prof. Baekelandt (KU Leuven), we have access to mouse and rat α-synuclein pathology models. Using short hairpin RNA, VPS13C will be knocked down in these models, while viral vectors encoding VPS13C mutants will be co-injected together with α-synuclein. Both cellular and in vivo models will be used to study the impact of VP13C dysfunction on endolysosomal transport regulation and interorganellar communication. This knowledge is needed to understand how VPS13C dysfunction leads to DLB/PD pathology including α-synuclein aggregation ultimately resulting in neuronal cell death in in-vivo models.
Some claim that especially in the field of agile software development the research lags years behind of the practice. In this paper, we characterize the status and main challenges for research on agile software development, and propose a preliminary roadmap, focusing on providing more empirical research, primarily on e...
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The results indicate that software developers are a slightly happy population, but the need for limiting the unhappiness of developers remains, and 219 factors representing causes of unhappiness while developing software are identified.
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This study investigates how Lean internal startup facilitates software product innovation in large companies and identifies its enablers and inhibitors, and shows the potential of the method-in-action framework to investigate the Lean startup approach in non-startup context.
Henry Edison, Nina M. Smørsgård, Xiaofeng Wang et al.· Journal of Systems and Softw...· 78 citations· ⚡6
The goal is to not only refine the accuracy of the LLM-based tool but also to underscore its potential in streamlining the software development lifecycle through proactive code improvement and education.
Z. Rasheed, Malik Abdul Sami, Muhammad Waseem et al.· arXiv.org· 62 citations· ⚡3
Agile methods continue to gain popularity. In particular, the Scrum method appears to be on the verge of becoming a de-facto standard in the industry, leading the so called Agile movement. While there are success stories and recommendations, there is little scientifically valid evidence of the challenges in the adoptio...
A. Marchenko, P. Abrahamsson· Agile Conference· 59 citations· ⚡11
A comprehensive overview of how enhanced sampling methods are reshaping the field, with a particular focus on the data-driven construction of collective variables, is provided.
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