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Author

Ashley K. Miles

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Open access Aug 2026

Pervasive integrative and conjugative elements shape Porphyromonas gingivalis gene repertoires

It is established that ICEs are pervasive contributors to Pg’s pangenome and unique strain-level gene repertoires, and suggest that ICEs likely impact the virulence and ecology of Pg through the introduction and spread of advantageous traits.

Cole B. Matrishin, Elaine M. Haase, Ashley K. Miles et al. · 0 citations
Aug 2026

maniFasta and the AllOralsDB: simplifying construction of comprehensive reference databases for metaproteomics

ManiFasta is presented, a tool enabling users to generate standardized, reproducible, and robustly documented protein reference sets from diverse input sources and datatypes, and the value of maniFasta is highlighted in the context of salivary metaproteomics, addressing the need for a taxonomically comprehensive refere...

Christopher Handelmann, Ashley K. Miles, Yin-Yin Ye et al. · 0 citations

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