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Shikhi Baruri

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Review Open access Jul 2026

SNP Detection Strategies in Genomic Research: A Comparative Review of Major Tools, Algorithms, Challenges and Applications

This review compares SNP detection programs such as GATK, BCFtools, FreeBayes, SAMtools, SAMtools, and DeepVariant and their algorithmic structures, namely pileup- based, haplotype-based, and machine-learning approaches and suggests that no single tool is the best.

Shikhi Baruri, Sunita Khanal · 0 citations