Bacteriophage P2 is a long-standing model for contractile injection systems, yet high-resolution structures of the intact virion and the mechanism of baseplate activation have remained unresolved. Here, we combine high-resolution cryo-electron microscopy and in situ cryo-electron tomography to characterize P2, using its lytic mutant P2vir, in its pre- and post-contraction states and during host infection. We identify a previously undescribed fold in the head-to-tail adaptor, which mediates the transition from 12-fold portal symmetry to sixfold tail symmetry through interlocking β-strand “handshake” interactions. Our structures further reveal a compact, threefold-symmetric baseplate established by a distinctive loop-helix module formed by the hub and tube initiator, which bioinformatic and phylogenetic analyses identify as a characteristic architectural feature of the Peduovirus lineage. We also propose a rope-like arrangement that anchors the tail fibre to the baseplate triplex component gpI and obtain evidence that the tape-measure protein adopts a C3 arrangement within the tail lumen, while computational predictions suggest a possible hexameric, pore-like organization after release. Comparison of pre- and post-contraction particles, supported by in situ imaging of infection, suggests that sheath contraction destabilizes the baseplate, promoting its disassembly. The inner tail tube appears to penetrate the host outer membrane but does not appear to reach the inner membrane, leading us to propose that the reorganized tape-measure protein forms a secondary conduit for genome translocation. These findings support a distinct model of contractile tail activation and expand the known architectural diversity of viral injection systems.
The comparison of adopter and non-adopter sample reveals three potential adoption inhibitor, security, data privacy, and portability, which underlines the importance of the technical and security perspectives for research investigating the adoption of technology.
Nattakarn Phaphoom, Xiaofeng Wang, S. Samuel et al.· Journal of Systems and Softw...· 111 citations· ⚡8
This study investigates how Lean internal startup facilitates software product innovation in large companies and identifies its enablers and inhibitors, and shows the potential of the method-in-action framework to investigate the Lean startup approach in non-startup context.
Henry Edison, Nina M. Smørsgård, Xiaofeng Wang et al.· Journal of Systems and Softw...· 78 citations· ⚡6
This paper highlights the challenges to conduct proper affect-related studies with psychology, provides a comprehensive literature review in affect theory, and proposes guidelines for conducting psychoempirical software engineering.
D. Graziotin, Xiaofeng Wang, P. Abrahamsson· SSE@SIGSOFT FSE· 56 citations· ⚡4
This study conducts a multiple case study on twenty European software startups and proposes a prototype-centric learning model in early stage software startups, and identifies factors that occur as barriers but also facilitators for prototyping in earlystage software startups.
Anh Nguyen-Duc, Xiaofeng Wang, P. Abrahamsson· International Conference on...· 44 citations· ⚡5
It is demonstrated that linker-free PROTACs can outperform traditional designs, marking a paradigm shift in PROTAC development for targeted protein degradation.
Pinal, a 16-billion-parameter foundation model that produces protein candidates from natural-language functional descriptions, supports natural language as a high-level interface for candidate generation in protein design, enabling programmable exploration with reduced reliance on manually specified structural or seque...
A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.