Skip to content
Open access

Targeting CDK‐2 With Novel Indole‐Pyrazole Hybrids: Discovery of Potent Anticancer Agents Supported by Mechanistic and In Silico Studies

Aug 2026 · Drug development research (Print) · Vol 87 · 0 citations · 55 references
Medicine

TL;DR

The consistent binding of compound 5 d within the ATP‐binding pocket of CDK‐2 was confirmed by molecular docking and molecular dynamics simulations, and attractive drug‐like and pharmacokinetic features, similar to those of Roscovitine, were demonstrated by in silico ADMET predictions.

Abstract

The current study devised and synthesized a novel class of pyrazole derivatives based on indole as possible inhibitors of cyclin‐dependent kinase‐2 (CDK‐2). 1H NMR, 13C NMR, NOESY, HMQC, and elemental analysis were used to confirm the structural integrity of the synthesized compounds. Promising CDK‐2 inhibitory activity was observed in biological assays, and numerous compounds exhibited sub‐micromolar IC50 values. Compound 5 d outperformed the reference inhibitor Roscovitine (IC50 = 0.716 µM) as the most potent inhibitor (IC50 = 0.536 µM), followed by compound 9 g (IC50 = 0.675 µM). SAR analysis showed that the observed activity was significantly influenced by the electronic nature of the added substituents as well as the orientation of the indole bond, with brominated derivatives exhibiting greater potency. The antiproliferative activity of the most potent compounds against the cancer cell lines HepG2, HCT‐116, and MCF‐7 was further assessed. In addition to having an enhanced selectivity index for normal MCF‐10A cells (SI = 8.00 vs. 4.96 for Roscovitine), compound 5 d had the greatest activity against MCF‐7 cells (IC50 = 6.78 µM), surpassing Roscovitine (IC50 = 8.11 µM). According to mechanistic investigations, compound 5 d significantly reduced the S‐phase population, markedly promoted apoptosis, and caused G1 and G2/M cell‐cycle arrest. Additionally, the consistent binding of compound 5 d within the ATP‐binding pocket of CDK‐2 was confirmed by molecular docking and molecular dynamics simulations, and attractive drug‐like and pharmacokinetic features, similar to those of Roscovitine, were demonstrated by in silico ADMET predictions. All of these results point to compound 5 d as a promising lead scaffold for developing potent CDK‐2‐targeted anticancer agents.

Read PDF

Similar papers

Open access Aug 2026

Synthesis, characterization, docking and in vitro evaluation of new pyrazole-carboxylate derivatives as antibacterial, anticancer and anti-inflammatory agents

Mechanistic studies indicated that compounds 5c and 5f inhibited cancer cell growth predominantly by inducing apoptosis rather than cell cycle arrest, indicating favourable selectivity.

Rachel Alveera Menezes, Navas Shereef Ellyan, M. M. et al. · 0 citations
Sep 2026

Cyanopyridine-based derivatives as potent anticancer agents: Integrating in silico analysis and in vitro biological targeting of the EGFR/AKT/MAPK Signaling Cascade.

The increasing global incidence of cancer and the recurrent development of resistance to standard treatments require a rapid development of innovative, multi-targeted chemotherapeutic medicines. This study focused on the strategic design and synthesis of a range of new cyanopyridine derivatives (1a,b-5a,b) targeting the critical oncogenic kinases. The antiproliferative efficacy of these derivatives was assessed against the breast cancer cell line (MCF-7) and the colorectal cancer cell line (HCT116), demonstrating moderate to significant inhibitory activity, with IC50 values ranging from 6.93 to 43.49 μM. Compound 2b emerged as the most selective and potent derivative in the series, showing greater activity against HCT116 cells (IC50 = 7.34 μM) compared to MCF-7 cells (IC50 = 17.55 μM). Experimental investigations demonstrated that compound 2b exerts its anticancer effects by inducing apoptosis and initiating G0-G1 cell cycle arrest. Moreover, compound 2b was identified as an effective inhibitor of key tumor-promoting signaling pathways, including EGFR (IC50 = 0.300 μM), AKT (IC50 = 0.706 μM), ERK (IC50 = 0.143 μM), and p38-MAPKα (IC50 = 0.308 μM). The structural design was validated by molecular docking simulations and molecular dynamics simulations, which revealed favorable binding affinities to the target kinases' active sites. In silico ADME analysis of compound 2b showed favorable drug-like properties, including compliance with the Veber rules and a bioavailability score of 0.55. The combined results underscore the promise of the cyanopyridine scaffold as a framework for developing selective multi-target anticancer medicines.

Shimaa M. Alhamaky, Marwa S. A. Hassan, Eman M. Ahmed et al. · 0 citations
Open access Aug 2026

Synthesis and Evaluation of Novel Piperazine Hybrids as Promising Anticancer Agents

The results revealed that the synthesised derivative 3h has potential binding affinity hence blocking the activity, and the synthesised piperazine derivatives are identified as promising lead compounds for further anticancer optimization.

Vaibhav Daund, Pooja Agarwal, A. Jain et al. · 0 citations

We use cookies to run the site and, with your consent, for analytics and to show ads. See our Cookie Policy.