This is the first study to demonstrate proteogenomic integration of peptide-level evidence with genomic data substantially improves genome annotation in E. histolytica, expanding its known coding repertoire and providing functional insights into previously uncharacterized regions with implications for understanding parasite biology and virulence mechanisms.
It is demonstrated that proteogenomic integration significantly improves the accuracy of L. donovani genome annotation by resolving truncated gene models and uncovering hidden coding potential, which improve genome annotation and highlight previously unrecognised coding potential supported by peptide evidence in Leishm...
Soumi Chowdhury, Shubhankar Pawar, Karthick Vasudevan et al.· Current Microbiology· 0 citations
An in silico genomic analysis was performed on Stenotrophomonas sp. strain 1800 to clarify its taxonomic position and functional potential. The 16S rRNA gene sequence showed 100% similarity to S. geniculata ATCC 19374T, and both strains shared identical genome size (4.8 Mb) and G+C content (66.2%). Genome-based compari...
Safia Merah, G. Dif, N. Bouras et al.· Analele Universitatii din Or...· 0 citations
These data establish that this phage constitutes a novel species within a newly proposed genus inside the family Darmviridae, expanding the known geographic distribution of crAss-like phages, highlight translational versatility among Segatella-infecting viruses, and emphasize the importance of expanding virome cohorts...
Lamyaa M. Ibrahim, M. ElRakaiby, Mohamed H. Habib et al.· bioRxiv· 0 citations
The taxonomic distribution, antimicrobial resistance genes (ARGs), virulence-associated genes (VAGs), sequence types (STs), predicted mobile genetic elements (MGEs), orthogroup-occupancy patterns, and core-genome sequence variation of publicly available S. maltophilia isolates were characterized using complementary bio...
Rong-Zheng Sun, Yan-Dan Liu, Xiao-Li Cao et al.· Frontiers in Microbiology· 0 citations
Findings support the use of L. coryniformis WBB05 as a safe adjunct culture for dairy applications and highlight Glycerol-3-phosphate oxidase (GlpO) as a candidate gene associated with aerobic reuterin production.
Harutoshi Tsuda· Journal of Dairy Research· 0 citations
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