The peptidoglycan (PG) cell wall protects bacteria from osmotic lysis and determines their shape. In rod-shaped bacteria, the lateral wall is elongated by the Rod system (elongasome). This synthetic machine is built around the RodA-PBP2 PG synthase complex, the actin-like protein MreB, and the accessory proteins MreC, MreD, and RodZ. Notably, RodZ shares a similar domain organization with FtsN, an essential division protein that triggers PG synthesis by the division apparatus (divisome). Both are single pass transmembrane proteins that bind actin-like proteins in the cytoplasm and have largely unstructured periplasmic regions capped by small, folded C-terminal domains. We therefore investigated whether RodZ might function like FtsN in activating the Rod system. To this end, gain-of-function variants of Escherichia coli RodZ were isolated that restored growth and shape to cells producing a hypomorphic mreC mutant. Production of these RodZ variants in wild-type cells increased resistance to the MreB antagonist A22 and enhanced sensitivity to the beta-lactam mecillinam. These phenotypes have all previously been associated with Rod system hyperactivation, and we found that they were caused by substitutions in the cytoplasmic juxtamembrane (JM) domain of RodZ. This domain is analogous to the N-terminus of FtsN known to promote divisome activation via its interaction with filaments of the actin-like FtsA protein. Structural modeling indicates that the JM domain of RodZ is similarly likely to associate with MreB filaments. Our results therefore support a model in which RodZ activates PG synthesis by the Rod system via a mechanism analogous to divisome activation by FtsN.
The comparison of adopter and non-adopter sample reveals three potential adoption inhibitor, security, data privacy, and portability, which underlines the importance of the technical and security perspectives for research investigating the adoption of technology.
Nattakarn Phaphoom, Xiaofeng Wang, S. Samuel et al.· Journal of Systems and Softw...· 111 citations· ⚡8
This study investigates how Lean internal startup facilitates software product innovation in large companies and identifies its enablers and inhibitors, and shows the potential of the method-in-action framework to investigate the Lean startup approach in non-startup context.
Henry Edison, Nina M. Smørsgård, Xiaofeng Wang et al.· Journal of Systems and Softw...· 78 citations· ⚡6
This paper highlights the challenges to conduct proper affect-related studies with psychology, provides a comprehensive literature review in affect theory, and proposes guidelines for conducting psychoempirical software engineering.
D. Graziotin, Xiaofeng Wang, P. Abrahamsson· SSE@SIGSOFT FSE· 56 citations· ⚡4
This study conducts a multiple case study on twenty European software startups and proposes a prototype-centric learning model in early stage software startups, and identifies factors that occur as barriers but also facilitators for prototyping in earlystage software startups.
Anh Nguyen-Duc, Xiaofeng Wang, P. Abrahamsson· International Conference on...· 44 citations· ⚡5
It is demonstrated that linker-free PROTACs can outperform traditional designs, marking a paradigm shift in PROTAC development for targeted protein degradation.
Pinal, a 16-billion-parameter foundation model that produces protein candidates from natural-language functional descriptions, supports natural language as a high-level interface for candidate generation in protein design, enabling programmable exploration with reduced reliance on manually specified structural or seque...
A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.