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protein folding

2,530 papers

#protein folding Dataset Open access Sep 2026

Rab Interactions identified by DEEPN.

Rab GTPase Y2H Interactome — Verified Hit DatasetThis dataset contains the curated set of protein-protein interactions identified in a yeast two-hybrid (Y2H) screen against 36 human Rab GTPases, each tested in both nucleotide-locked conformations: GTP-bound (constitutively active, Q→L mutant) and GDP-bound (dominant-ne...

Robert Piper, Christopher P. Ptak, Tabitha A. Peterson · 0 citations
#protein folding Open access Sep 2026

Systematic screening of Citri reticulatae pericarpium polysaccharides reveals uronic acid–associated anti-SARS-CoV-2 activity

Citri reticulatae pericarpium (CP), the dried peel of Citrus reticulata Blanco (Rutaceae), is a common traditional Chinese medicine and edible material with effects of regulating Qi, strengthening the spleen, and resolving phlegm. While its flavonoids have been extensively studied, the polysaccharides, which are the ma...

Haihan Pei, Yupeng Zhang, Kan Ding et al. · 0 citations
#protein folding Review Open access Sep 2026

Convergent evolution of viral nucleases targeting cyclic dinucleotides

This Pearl synthesizes recent advancements in understanding of viral CDN-degrading nucleases and emphasizes three key themes: there is the conservation of CDN signaling mechanisms across different biological domains, structural protein folds are conserved, and structural protein folds are conserved, allowing for functi...

Zi-Chen Li, Lei-Liang Zhang · 0 citations
#protein folding Open access Sep 2026

Active learning enables evolutionary discovery and characterization of fungal transcriptional activators

A hybrid framework that leverages high-throughput molecular assays and active learning to quantify biological properties across evolutionary space and provides a general strategy for building predictive models that better capture the diversity of natural sequence-to-function relationships is presented.

Lucas M. Waldburger, Hunter M. Nisonoff, Marissa A. Zintel et al. · 0 citations
#protein folding Open access Sep 2026

An Information Dynamics Model of Protein-Templated DNA Synthesis: From Qualitative Observations to Quantitative Predictions

INFORMATION-DYNAMICS MODEL OF PROTEIN-TEMPLATED DNA SYNTHESIS Computational companion for a theoretical study of the bacterial anti-phage reverse transcriptase Drt3b, which synthesizes strictly alternating poly(AC) DNA without any nucleic acid template. BACKGROUND In 2026, Dr. Pujuan Deng et al. (Science) reported that...

Kai Huang, Hongkui Liu, Ziwei Huang · 0 citations
#protein folding Open access Sep 2026

Summarizing RNA Structural Ensembles via Maximum Agreement Secondary Structures

Abstract Summarizing a collection P of related RNA secondary structures is a key challenge in applications like evolutionary analysis, alternative fold studies and mRNA vaccine design. This requires both clustering the input structures into similar groups and identifying the core structural motifs on which they agree o...

Xinyu Gu, Stefan Ivanovic, Daniel W. Feng et al. · 0 citations
#protein folding Open access Sep 2026

Two Glu/Asp Residues Cooperatively Mediate an Early Step of ATP Hydrolysis in GHKL ATPases MutL and GyrB

GHKL ATPases share a unique Bergerat ATP-binding fold and regulate diverse biological processes through ATP-dependent conformational changes. An early step of ATP hydrolysis in this family has been attributed to a single highly conserved glutamate residue proposed to function as the general base. However, mutations of...

Kenji Fukui, Ayaka Shibuya, T. Murakawa et al. · 0 citations
#protein folding Open access Sep 2026

Evaluation of naked oat varieties in the Kursk region

The studies were conducted in 2023-2025 to identify naked oat lines bred at the Nemchinovka Federal Research Centre that combine high productivity, grain quality, and adaptability to the conditions of the Kursk region on typical chernozem. The work was carried out in competitive variety trials (randomized blocks, 6-fol...

E. Logvinova, S. Krivosheev, A. Yemelyanova · 0 citations
#protein folding Open access Sep 2026

Photorespiration Is Associated with Nitrogen Metabolism and Nitrogen Productivity in Kentucky Bluegrass

Photorespiration links carbon metabolism with nitrogen assimilation in C3 plants, but its relationship with nitrogen productivity in perennial turfgrass remains unclear. Ten Kentucky bluegrass (Poa pratensis L.) cultivars were screened for photorespiration rate and intensity. ‘Heidi’ and ‘My Holiday’ exhibited the high...

Xiao-Yan Li, Hui-Sen Zhu, Dian Li et al. · 0 citations
#protein folding Open access Sep 2026

Protective effect of Panax ginseng on AlCl₃-induced liver, kidney, and testis toxicity in male albino rats: biochemical, histopathological, and molecular study

In conclusion, Panax ginseng may have protective effect on AlCl₃-induced liver, kidney, and testicular toxicity.

Fatimah A. Alsaeed, Sayed Soliman Abdel Ghfar, Montaser Elsayed Ali · 0 citations
#protein folding Open access Sep 2026

Unraveling the Glycosylation Machinery of Bothrops jararaca Snake Through Multiomics and Structural In Silico Analyses

Multiomics and structural in silico analyses of publicly available experimental genomic, transcriptomic, and proteomic datasets are performed, combined with structural modeling, to investigate the glycosylation pathway of the medically important snake B. jararaca, suggesting that the glycosylation machinery is coupled...

Thales A. M. Fernandes, M. Nishiyama-Jr · 0 citations

From tech blogs

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Google DeepMind Blog Sep 30, 2026

Introducing SynthID Bio

Proof of concept for watermarking AI-generated proteins while preserving biological function.

MIT News · Artificial Intelligence Aug 27, 2026

Looking beyond natural sequences

A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.

Google DeepMind Blog Nov 25, 2025

AlphaFold: Five years of impact

Explore how AlphaFold has accelerated science and fueled a global wave of biological discovery.

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