This Primer outlines experimental and computational workflows tailored to peptide–GPCR interactions, including in silico peptide mining, deorphanization strategies, library-based screening platforms, modern pathway-resolved biosensor assays, and approaches for peptide stabilization and optimization strategies to address their pharmacokinetic limitations.
This review examines how endogenous cyclic peptides, venom‐derived peptides, plant cyclotides, and microbial macrocycles provide structurally defined templates for probing GPCR recognition, and how engineering approaches have expanded their utility as both bioactive ligands and molecular probes.
Yingxin Zhou, Ni Li, Ji-Shen Zheng· ChemBioChem· 0 citations
The application of the interaction determinant likelihood (IDL) framework to closely related GPCR paralogs demonstrates the emergence of distinct peptide specificities through limited, context-dependent residue substitutions, without significant alterations in overall receptor structure.
A. Shiraishi, H. Satake· General and Comparative Endo...· 0 citations
This work explores structure-based strategies to identify small-molecule agonists of neurotensin (NTS) receptors, leading to the discovery of potent agonists with in vivo antinociceptive effects and to insights into the molecular basis of receptor activation.
Nicolas Panel, D. D. Vo, Harald Hübner et al.· Nature Communications· 0 citations
GaMD ensemble docking improved early AM enrichment across all four targets under at least one program, and the Boltz-2 deep-learning program showed minimal sensitivity to GaMD templates and underperformed conventional docking, suggesting its affinity predictions complement rather than replace physics- and empirical-bas...
T. D. Thompson, Ying-Long Miao· bioRxiv· 0 citations
This study provides potential lead compounds for the design of small-molecule allosteric drugs targeting class B1 GPCRs and performs conformational sampling and combined dynamic pocket detection algorithms, MDpocket and FTMove, to identify six characteristic cryptic pockets within the dynamic trajectories.
Zhi Dong, Long Cheng, Qingxin Shi et al.· International Journal of Bio...· 0 citations
This review provides an updated overview of cyclic peptides as modulators of PPIs, outlining current opportunities, methodological advances, and remaining challenges in the development of cyclic peptide-based PPI modulators.
Sara Salvi, P. Linciano, S. Collina et al.· International Journal of Mol...· 0 citations
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